MolNFT v1 · #142012 · protein
Crystal structure of penicillin-binding protein D2 from listeria monocytogenes in the ampicillin bound form
5ZQC: “Crystal structure of penicillin-binding protein D2 from listeria monocytogenes in the ampicillin bound form”. X-ray diffraction, 1 ligand (AIX). MolNFT v1 #142012 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5ZQC
- Type
- protein
- Length
- 979 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8Y3M3
- Ligands
- AIX
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 244 | — | Q8Y3M3 |
| B | — | protein | 243 | — | Q8Y3M3 |
| D | — | protein | 248 | — | Q8Y3M3 |
Ligands and binding sites
- AIX · (2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid · ligand · 4 copies · chains A, B, C, D
- GOL · Glycerol · additive · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8Y3M3
- Elsewhere: RCSB PDB 5ZQC · PDBe 5ZQC · UniProt Q8Y3M3
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