MolNFT v1 · #142009 · protein + RNA
Crystal structure of sprlmcd with U747 stemloop RNA
5ZQ8: “Crystal structure of sprlmcd with U747 stemloop RNA”. X-ray diffraction, 1 ligand (NI). MolNFT v1 #142009 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5ZQ8
- Type
- protein + RNA
- Length
- 934 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q97R12
- Ligands
- NI
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B, A | — | protein | 455 | — | Q97R12 |
| C, D | — | rna | 12 | — | — |
Ligands and binding sites
- NI · Nickel (II) ion · metal · 2 copies · chains B, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5ZQ8 · Crystal structure of spRlmCD with U747 stemloop RNA · the same entry in another collection · chain C against C, TM-score 1.00
- Q97R12 · AlphaFold monomer V2.0 prediction for uncharacterized RNA methyltransferase SP_1029… · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q97R12
- Elsewhere: RCSB PDB 5ZQ8 · PDBe 5ZQ8 · UniProt Q97R12
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.