MolNFT v1 · #141889 · protein
Crystal structure of aprt from Y. pseudotuberculosis in complex with adenine.
5ZMI · Adenine phosphoribosyltransferase: “Crystal structure of aprt from Y. pseudotuberculosis in complex with adenine.”. X-ray diffraction, 2 ligands (ADE, NA), 1 pocket (best druggability 0.50). MolNFT v1 #141889 on GenesisL1: 3D…
- PDB
- 5ZMI
- Type
- protein
- Length
- 178 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Adenine phosphoribosyltransferase
- EC
- 2.4.2.7
- UniProt
- Q66DQ2
- Ligands
- ADE, NA
- Pockets
- 1 · best druggability 0.50
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Adenine phosphoribosyltransferase (EC 2.4.2.7) | protein | 178 | 34% helix, 32% strand | Q66DQ2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 236 | 0.50 | 0.75 | 33 | ADE |
Compared structures
- 5ZMI · Crystal structure of APRT from Y. pseudotuberculosis in complex with adenine. · the same entry in another collection · chain A against A, TM-score 1.00
- Q66DQ2 · AlphaFold monomer V2.0 prediction for adenine phosphoribosyltransferase (Q66DQ2) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q66DQ2
- Elsewhere: RCSB PDB 5ZMI · PDBe 5ZMI · UniProt Q66DQ2
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