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MolNFT v1 · #141832 · protein + DNA

Human exog-H140A in complex with duplex DNA

5ZKI: “Human exog-H140A in complex with duplex DNA”. X-ray diffraction, 2 ligands (MG, CL). MolNFT v1 #141832 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
5ZKI
Type
protein + DNA
Length
652 residues
Chains
6
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
Q9Y2C4
Ligands
MG, CL

Structure

x-ray diffraction · 3 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein300—Q9Y2C4
C, D, E, F—dna12——
B—protein304—Q9Y2C4

Ligands and binding sites

  • MG · Magnesium ion · metal · 3 copies · chains A, C, E, B
  • CL · Chloride ion · ion · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5ZKI · Human EXOG-H140A in complex with duplex DNA · the same entry in another collection · chain B against B, TM-score 1.00
  • Q9Y2C4 · AlphaFold monomer V2.0 prediction for nuclease exog, mitochondrial (Q9Y2C4) · a predicted model of the same protein · chain A against A, TM-score 0.99

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