MolNFT v1 · #141705 · protein

Crystal structure of parvalbumin spvi, the major allergens in mustelus griseus

5ZGM: “Crystal structure of parvalbumin spvi, the major allergens in mustelus griseus”. X-ray diffraction, 2 ligands (CA, SO4). MolNFT v1 #141705 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5ZGM
Type: protein
Length: 218 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Parvalbumin spvi
Ligands: CA, SO4

Structure

x-ray diffraction · 1 distinct chain · 57% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Parvalbumin spvi	protein	109	57% helix, 2% strand	—

Ligands and binding sites

CA · Calcium ion · metal · 4 copies · chains A, B
SO4 · Sulfate ion · ion · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 367 Å² buried · 8 hydrogen bonds · protein-protein

Compared structures

5ZGM · Crystal Structure of Parvalbumin SPVI, the Major Allergens in Mustelus griseus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 5ZGM · PDBe 5ZGM

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