MolNFT v1 · #141620 · protein
The ligand-free structure of fomd
5ZDM: “The ligand-free structure of fomd”. X-ray diffraction, 1 ligand (CA), 3 pockets (best druggability 0.51). MolNFT v1 #141620 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5ZDM
- Type
- protein
- Length
- 198 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fomd
- UniProt
- D2SNF7
- Ligands
- CA
- Pockets
- 3 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 19% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fomd | protein | 198 | 19% helix, 36% strand | D2SNF7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 180 | 0.51 | 0.78 | 31 | CA, GOL |
| 2 | 60 | 0.36 | 0.79 | 19 | empty |
| 3 | 55 | 0.28 | 0.75 | 16 | empty |
Compared structures
- 5ZDM · The ligand-free structure of FomD · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D2SNF7
- Elsewhere: RCSB PDB 5ZDM · PDBe 5ZDM · UniProt D2SNF7
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