MolNFT v1 · #141545 · protein
Crystal structure of thymidylate kinase in complex with ADP and tmp from thermus thermophilus HB8
5ZB4: “Crystal structure of thymidylate kinase in complex with ADP and tmp from thermus thermophilus HB8”. X-ray diffraction, 4 ligands (ADP, TMP, CA). MolNFT v1 #141545 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5ZB4
- Type
- protein
- Length
- 371 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q5SHX3
- Ligands
- ADP, TMP, CA, CL
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 186 | — | Q5SHX3 |
| B | — | protein | 185 | — | Q5SHX3 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains A, B
- TMP · Thymidine-5'-phosphate · ligand · 2 copies · chains A, B
- CA · Calcium ion · metal · 15 copies · chains A, B
- CL · Chloride ion · ion · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5ZB4 · Crystal structure of thymidylate kinase in complex with ADP and TMP from thermus… · the same entry in another collection · chain A against A, TM-score 1.00
- Q5SHX3 · AlphaFold monomer V2.0 prediction for thymidylate kinase (Q5SHX3) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SHX3
- Elsewhere: RCSB PDB 5ZB4 · PDBe 5ZB4 · UniProt Q5SHX3
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