MolNFT v1 · #141421 · protein
Structure of SFYFP48S95C66BPA
5Z6Y · Green fluorescent protein: “Structure of SFYFP48S95C66BPA”. X-ray diffraction, 1 ligand (BF6), 1 pocket (best druggability 0.72). MolNFT v1 #141421 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5Z6Y
- Type
- protein
- Length
- 225 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Green fluorescent protein
- UniProt
- A0A059PIQ0
- Ligands
- BF6
- Pockets
- 1 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 9% helix, 52% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Green fluorescent protein | protein | 225 | 9% helix, 52% strand | A0A059PIQ0 |
Ligands and binding sites
- BF6 · [(4Z)-2-(aminomethyl)-4-{[4-(benzenecarbonyl) phenyl]methylidene}-5-oxo-4,5-dihydro-1H-imidazol-1-yl]acetic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 97 | 0.72 | 0.94 | 28 | BF6 |
Modifications
Observed in the structure: 2 covalent (covalent ligand).
Compared structures
- 5Z6Y · Structure of sfYFP48S95C66BPA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A059PIQ0
- Elsewhere: RCSB PDB 5Z6Y · PDBe 5Z6Y · UniProt A0A059PIQ0
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