MolNFT v1 · #141362 · protein

Crystal structure of pacysb ntd domain with space group P4

5Z4Y · Cys regulon transcriptional activator: “Crystal structure of pacysb ntd domain with space group P4”. X-ray diffraction, 1 pocket (best druggability 0.43). MolNFT v1 #141362 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 5Z4Y
Type: protein
Length: 178 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cys regulon transcriptional activator
UniProt: O05926
Pockets: 1 · best druggability 0.43

Structure

x-ray diffraction · 1 distinct chain · 70% helix, 8% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Cys regulon transcriptional activator	protein	89	70% helix, 8% strand	O05926

Ligands and binding sites

GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	149	0.43	0.74	23	empty

Interfaces

1 interface between chains.

A–B · 1089 Å² buried · 2 hydrogen bonds · protein-protein

Compared structures

5Z4Y · Crystal structure of PaCysB NTD domain with space group P4 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O05926
Elsewhere: RCSB PDB 5Z4Y · PDBe 5Z4Y · UniProt O05926

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