Research workbench
Crystal structure of pacysb ntd domain with space group P4
Analyse Crystal structure of pacysb ntd domain with space group P4 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5Z4Y
- Type
- protein
- Length
- 178 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cys regulon transcriptional activator
- UniProt
- O05926
- Pockets
- 1 · best druggability 0.43
Structure
x-ray diffraction · 1 distinct chain · 70% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Cys regulon transcriptional activator | protein | 89 | 70% helix, 8% strand | O05926 |
Ligands and binding sites
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 149 | 0.43 | 0.74 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 1089 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 5Z4Y · Crystal structure of PaCysB NTD domain with space group P4 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O05926
- Elsewhere: RCSB PDB 5Z4Y · PDBe 5Z4Y · UniProt O05926
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