MolNFT v1 · #14134 · protein
Glycosyltransferase B + udp + H antigen acceptor
1LZJ: “Glycosyltransferase B + udp + H antigen acceptor”. X-ray diffraction, 5 ligands (BHG, UDP, FUC), 2 pockets (best druggability 0.52). MolNFT v1 #14134 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1LZJ
- Type
- protein
- Length
- 263 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycosyltransferase B
- Ligands
- BHG, UDP, FUC, HG, MN
- Pockets
- 2 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycosyltransferase B | protein | 263 | 31% helix, 21% strand | — |
Ligands and binding sites
- BHG · hexyl beta-D-galactopyranoside · ligand · chains A
- UDP · Uridine-5'-diphosphate · ligand · chains A
- FUC · alpha-L-fucopyranose · sugar · chains A
- HG · Mercury (II) ion · metal · 4 copies · chains A
- MN · Manganese (II) ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 234 | 0.52 | 0.76 | 29 | HG |
| 2 | 52 | 0.31 | 0.77 | 14 | FUC |
Compared structures
- 1LZJ · Glycosyltransferase B + UDP + H antigen acceptor · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1LZJ · PDBe 1LZJ
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