MolNFT v1 · #141315 · protein

Crystal structure of C terminal region of G-protein interacting protein 1 (GIP1) from dictyostelium discoideum form II

5Z39: “Crystal structure of C terminal region of G-protein interacting protein 1 (GIP1) from dictyostelium…”. X-ray diffraction, 3 ligands (PEF, LHG, NA), 1 pocket (best druggability 0.83). MolNFT v1 #141315 on GenesisL1: 3D structure…

PDB: 5Z39
Type: protein
Length: 166 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: G-protein interacting protein 1
UniProt: Q55BQ2
Ligands: PEF, LHG, NA
Pockets: 1 · best druggability 0.83

Structure

x-ray diffraction · 1 distinct chain · 77% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	G-protein interacting protein 1	protein	166	77% helix, 1% strand	Q55BQ2

Ligands and binding sites

PEF · Di-palmitoyl-3-sn-phosphatidylethanolamine · ligand · chains A
LHG · 1,2-dipalmitoyl-phosphatidyl-glycerole · ligand · chains A
NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	495	0.83	0.89	45	PEF

Compared structures

5Z39 · Crystal structure of C terminal region of G-protein interacting protein 1 (Gip1) from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q55BQ2
Elsewhere: RCSB PDB 5Z39 · PDBe 5Z39 · UniProt Q55BQ2

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