MolNFT v1 · #141311 · protein

Structure of Y68F mutant metal free periplasmic metal binding protein from candidatus liberibacter asiaticus

5Z35 · Periplasmic solute binding protein: “Structure of Y68F mutant metal free periplasmic metal binding protein from candidatus liberibacter asiaticus”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.57). MolNFT v1…

PDB: 5Z35
Type: protein
Length: 268 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Periplasmic solute binding protein
UniProt: C6XF58
Ligands: SO4
Pockets: 2 · best druggability 0.57

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Periplasmic solute binding protein	protein	268	44% helix, 17% strand	C6XF58

Ligands and binding sites

SO4 · Sulfate ion · ion · 3 copies · chains A
GOL · Glycerol · additive · 4 copies · chains A
ACT · Acetate ion · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	96	0.57	0.86	31	empty
2	75	0.33	0.75	15	empty

Compared structures

5Z35 · Structure of Y68F mutant metal free periplasmic metal binding protein from candidatus… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C6XF58
Elsewhere: RCSB PDB 5Z35 · PDBe 5Z35 · UniProt C6XF58

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