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Structure of Y68F mutant metal free periplasmic metal binding protein from candidatus liberibacter asiaticus

Analyse Structure of Y68F mutant metal free periplasmic metal binding protein from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5Z35
Type: protein
Length: 268 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Periplasmic solute binding protein
UniProt: C6XF58
Ligands: SO4
Pockets: 2 · best druggability 0.57

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Periplasmic solute binding protein	protein	268	44% helix, 17% strand	C6XF58

Ligands and binding sites

SO4 · Sulfate ion · ion · 3 copies · chains A
GOL · Glycerol · additive · 4 copies · chains A
ACT · Acetate ion · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	96	0.57	0.86	31	empty
2	75	0.33	0.75	15	empty

Compared structures

5Z35 · Structure of Y68F mutant metal free periplasmic metal binding protein from candidatus… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C6XF58
Elsewhere: RCSB PDB 5Z35 · PDBe 5Z35 · UniProt C6XF58

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