MolNFT v1 · #141253 · protein
The crystal structure of upa in complex with 4-iodobenzylamine at PH7.4
5Z1C · Urokinase-type plasminogen activator: “The crystal structure of upa in complex with 4-iodobenzylamine at PH7.4”. X-ray diffraction, 1 ligand (ZXI), 1 pocket (best druggability 0.45). MolNFT v1 #141253 on GenesisL1: 3D structure…
- PDB
- 5Z1C
- Type
- protein
- Length
- 245 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Urokinase-type plasminogen activator
- EC
- 3.4.21.73
- UniProt
- P00749
- Ligands
- ZXI
- Pockets
- 1 · best druggability 0.45
Structure
x-ray diffraction · 1 distinct chain · 11% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| U | Urokinase-type plasminogen activator (EC 3.4.21.73) | protein | 245 | 11% helix, 40% strand | P00749 |
Ligands and binding sites
- ZXI · 1-(4-iodophenyl)methanamine · ligand · chains U
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 162 | 0.45 | 0.76 | 34 | ZXI |
Modifications
Observed in the structure: 5 disulfide (disulfide).
Compared structures
- 5Z1C · The crystal structure of uPA in complex with 4-Iodobenzylamine at pH7.4 · the same entry in another collection · chain U against U, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00749
- Elsewhere: RCSB PDB 5Z1C · PDBe 5Z1C · UniProt P00749
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