MolNFT v1 · #141244 · protein

Crystal structure of grass carp CD8 alpha alpha homodimers

5Z11 · CD8 alpha chain: “Crystal structure of grass carp CD8 alpha alpha homodimers”. X-ray diffraction, 2 pockets (best druggability 0.50). MolNFT v1 #141244 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5Z11
Type: protein
Length: 204 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: CD8 alpha chain
UniProt: C7FF18
Pockets: 2 · best druggability 0.50

Structure

x-ray diffraction · 2 distinct chains · 7% helix, 51% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	CD8 alpha chain	protein	104	7% helix, 51% strand	C7FF18
B	CD8 alpha chain	protein	100	7% helix, 51% strand	C7FF18

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	116	0.50	0.81	17	empty
2	88	0.32	0.73	19	empty

Interfaces

1 interface between chains.

A–B · 929 Å² buried · 6 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

5Z11 · Crystal Structure of Grass Carp CD8 alpha alpha Homodimers · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C7FF18
Elsewhere: RCSB PDB 5Z11 · PDBe 5Z11 · UniProt C7FF18

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.