Research workbench
Crystal structure of grass carp CD8 alpha alpha homodimers
Analyse Crystal structure of grass carp CD8 alpha alpha homodimers in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5Z11
- Type
- protein
- Length
- 204 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CD8 alpha chain
- UniProt
- C7FF18
- Pockets
- 2 · best druggability 0.50
Structure
x-ray diffraction · 2 distinct chains · 7% helix, 51% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | CD8 alpha chain | protein | 104 | 7% helix, 51% strand | C7FF18 |
| B | CD8 alpha chain | protein | 100 | 7% helix, 51% strand | C7FF18 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 116 | 0.50 | 0.81 | 17 | empty |
| 2 | 88 | 0.32 | 0.73 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 929 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 5Z11 · Crystal Structure of Grass Carp CD8 alpha alpha Homodimers · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C7FF18
- Elsewhere: RCSB PDB 5Z11 · PDBe 5Z11 · UniProt C7FF18
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