MolNFT v1 · #141184 · protein

Structure of the pin domain endonuclease UTP24

5YZ4 · RRNA-processing protein FCF1: “Structure of the pin domain endonuclease UTP24”. X-ray diffraction, 2 ligands (CA, ZN). MolNFT v1 #141184 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5YZ4
Type: protein
Length: 133 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RRNA-processing protein FCF1
UniProt: O13610
Ligands: CA, ZN

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RRNA-processing protein FCF1	protein	133	41% helix, 21% strand	O13610

Ligands and binding sites

CA · Calcium ion · metal · chains A
ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5YZ4 · Structure of the PIN domain endonuclease Utp24 · the same entry in another collection · chain A against A, TM-score 1.00
O13610 · AlphaFold monomer V2.0 prediction for rRNA-processing protein FCF1 (O13610) · a predicted model of the same protein · chain A against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O13610
Elsewhere: RCSB PDB 5YZ4 · PDBe 5YZ4 · UniProt O13610

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