MolNFT v1 · #141175 · protein
Structure K106A thaumatin
5YYR · Preprothaumatin I: “Structure K106A thaumatin”. X-ray diffraction. MolNFT v1 #141175 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YYR
- Type
- protein
- Length
- 207 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Preprothaumatin I
- UniProt
- A1IIJ1
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Preprothaumatin I | protein | 207 | 12% helix, 39% strand | A1IIJ1 |
Ligands and binding sites
- GOL · Glycerol · additive · 3 copies · chains A
- TLA · L(+)-tartaric acid · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 8 disulfide (disulfide).
Compared structures
- 5YYR · Structure K106A thaumatin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A1IIJ1
- Elsewhere: RCSB PDB 5YYR · PDBe 5YYR · UniProt A1IIJ1
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