MolNFT v1 · #141148 · protein
Crystal structure of shaft pilin spad from lactobacillus rhamnosus gg in bent conformation
5YXO · Pilus assembly protein: “Crystal structure of shaft pilin spad from lactobacillus rhamnosus gg in bent conformation”. X-ray diffraction, 2 pockets (best druggability 0.63). MolNFT v1 #141148 on GenesisL1: 3D structure, binding sites…
- PDB
- 5YXO
- Type
- protein
- Length
- 415 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pilus assembly protein
- UniProt
- A0A179XFF5
- Pockets
- 2 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pilus assembly protein | protein | 415 | 12% helix, 46% strand | A0A179XFF5 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 258 | 0.63 | 0.81 | 43 | empty |
| 2 | 62 | 0.27 | 0.72 | 21 | empty |
Modifications
Observed in the structure: 2 isopeptide (isopeptide).
Compared structures
- 5YXO · Crystal structure of shaft pilin spaD from Lactobacillus rhamnosus GG in bent conformation · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A179XFF5
- Elsewhere: RCSB PDB 5YXO · PDBe 5YXO · UniProt A0A179XFF5
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