Research workbench
Crystal structure of shaft pilin spad from lactobacillus rhamnosus gg in bent conformation
Analyse Crystal structure of shaft pilin spad from lactobacillus rhamnosus gg in bent… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5YXO
- Type
- protein
- Length
- 415 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pilus assembly protein
- UniProt
- A0A179XFF5
- Pockets
- 2 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pilus assembly protein | protein | 415 | 12% helix, 46% strand | A0A179XFF5 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 258 | 0.63 | 0.81 | 43 | empty |
| 2 | 62 | 0.27 | 0.72 | 21 | empty |
Modifications
Observed in the structure: 2 isopeptide (isopeptide).
Compared structures
- 5YXO · Crystal structure of shaft pilin spaD from Lactobacillus rhamnosus GG in bent conformation · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A179XFF5
- Elsewhere: RCSB PDB 5YXO · PDBe 5YXO · UniProt A0A179XFF5
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