MolNFT v1 · #141122 · protein + DNA
Crystal structure of TREX1 in complex with a inosine contained dsdna
5YWU: “Crystal structure of TREX1 in complex with a inosine contained dsdna”. X-ray diffraction, 1 ligand (MG). MolNFT v1 #141122 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YWU
- Type
- protein + DNA
- Length
- 482 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q91XB0
- Ligands
- MG
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 225 | — | Q91XB0 |
| B | — | protein | 231 | — | Q91XB0 |
| C | — | dna | 13 | — | — |
| D | — | dna | 13 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal · 4 copies · chains A, C, B, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YWU · Crystal structure of TREX1 in complex with a inosine contained dsDNA · the same entry in another collection · chain A against A, TM-score 1.00
- Q91XB0 · AlphaFold monomer V2.0 prediction for three-prime repair exonuclease 1 (Q91XB0) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q91XB0
- Elsewhere: RCSB PDB 5YWU · PDBe 5YWU · UniProt Q91XB0
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