MolNFT v1 · #141050 · protein
The high resolution structure of chitinase (RMCHI1) from the thermophilic fungus rhizomucor miehei (sp P1)
5YUQ · Chintase: “The high resolution structure of chitinase (RMCHI1) from the thermophilic fungus rhizomucor miehei (sp P1)”. X-ray diffraction, 5 pockets (best druggability 0.75). MolNFT v1 #141050 on GenesisL1: 3D structure, binding…
- PDB
- 5YUQ
- Type
- protein
- Length
- 740 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chintase
- EC
- 3.2.1.14
- Pockets
- 5 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 30% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Chintase (EC 3.2.1.14) | protein | 370 | 30% helix, 22% strand | — |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1074 | 0.75 | 0.78 | 71 | empty |
| 2 | 1167 | 0.74 | 0.77 | 98 | empty |
| 3 | 54 | 0.35 | 0.79 | 15 | empty |
| 4 | 125 | 0.34 | 0.72 | 21 | empty |
| 5 | 69 | 0.27 | 0.72 | 11 | empty |
Interfaces
1 interface between chains.
- A–B · 350 Ų buried · 2 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 5YUQ · The high resolution structure of chitinase (RmChi1) from the thermophilic fungus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5YUQ · PDBe 5YUQ
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