Research workbench
The high resolution structure of chitinase (RMCHI1) from the thermophilic fungus rhizomucor miehei (sp P1)
Analyse The high resolution structure of chitinase (RMCHI1) from the thermophilic… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5YUQ
- Type
- protein
- Length
- 740 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chintase
- EC
- 3.2.1.14
- Pockets
- 5 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 30% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Chintase (EC 3.2.1.14) | protein | 370 | 30% helix, 22% strand | — |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1074 | 0.75 | 0.78 | 71 | empty |
| 2 | 1167 | 0.74 | 0.77 | 98 | empty |
| 3 | 54 | 0.35 | 0.79 | 15 | empty |
| 4 | 125 | 0.34 | 0.72 | 21 | empty |
| 5 | 69 | 0.27 | 0.72 | 11 | empty |
Interfaces
1 interface between chains.
- A–B · 350 Ų buried · 2 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 5YUQ · The high resolution structure of chitinase (RmChi1) from the thermophilic fungus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5YUQ · PDBe 5YUQ
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.