MolNFT v1 · #141002 · protein
Pig heart lactate dehydrogenase in complex with NADH and oxamate
5YTA: “Pig heart lactate dehydrogenase in complex with NADH and oxamate”. X-ray diffraction, 2 ligands (NAD, OXM). MolNFT v1 #141002 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YTA
- Type
- protein
- Length
- 664 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P00336
- Ligands
- NAD, OXM
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 332 | — | P00336 |
Ligands and binding sites
- NAD · Nicotinamide-adenine-dinucleotide · ligand · 2 copies · chains A, B
- OXM · Oxamic acid · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YTA · Pig Heart Lactate Dehydrogenase in complex with NADH and Oxamate · the same entry in another collection · chain A against A, TM-score 1.00
- P00336 · AlphaFold monomer V2.0 prediction for L-lactate dehydrogenase B chain (P00336) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00336
- Elsewhere: RCSB PDB 5YTA · PDBe 5YTA · UniProt P00336
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