MolNFT v1 · #1410 · DNA
Binding of ar-1-144, a tri-imidazole DNA minor groove binder, to ccgg sequence analyzed by NMR spectroscopy
1B0S · DNA (5'-D(*GP*AP*AP*CP*CP*GP*GP*TP*TP*C)-3'): “Binding of ar-1-144, a tri-imidazole DNA minor groove binder, to ccgg sequence analyzed by NMR spectroscopy”. Solution nmr, 1 ligand (AR1). MolNFT v1 #1410 on GenesisL1: 3D structure…
- PDB
- 1B0S
- Type
- DNA
- Length
- 20 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*GP*AP*AP*CP*CP*GP*GP*TP*TP*C)-3')
- Ligands
- AR1
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | DNA (5'-D(*GP*AP*AP*CP*CP*GP*GP*TP*TP*C)-3') | dna | 10 | — | — |
Ligands and binding sites
- AR1 · (2-{[4-({4-[(4-formylamino-1-methyl-1H-imidazole-2-carbonyl)-amino]-1-methyl-1H-imidazole-2-carbonyl}-amino)-1-methyl-1 H-imidazole-2-carbonyl]-amino}-ethyl)-dimethyl-ammonium · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 430 Ų buried · 47 hydrogen bonds · nucleic-nucleic
Compared structures
- 1B0S · Binding of ar-1-144, a tri-imidazole DNA minor groove binder, to ccgg sequence analyzed… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1B0S · PDBe 1B0S
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