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Ligand · AR1

AR1 · (2-{[4-({4-[(4-formylamino-1-methyl-1H-imidazole-2-carbonyl)-amino]-1-methyl-1H-imidazole-2-carbonyl}-amino)-1-methyl-1 H-imidazole-2-carbonyl]-amino}-ethyl)-dimethyl-ammonium

AR1, (2-{[4-({4-[(4-formylamino-1-methyl-1H-imidazole-2-carbonyl)-amino]-1-methyl-1H-imidazole-2-carbonyl}-amino)-1-methyl-1 H-imidazole-2-carbonyl]-amino}-ethyl)-dimethyl-ammonium (C20 H28 N11 O4 +1, 486.5 g/mol), in the MolNFT structures…

Component
AR1
Formula
C20 H28 N11 O4 +1
Class
ligand
Structures
4
PDB entries
2

Binding sites

AR1 in 4 structures; the first of them:

  • 1B0S · Binding of ar-1-144, a tri-imidazole DNA minor groove binder, to ccgg sequence analyzed… · AR1 A11 · binds DC4, DC5, DG6, DG7, DT8, DT9, DC14, DG16 and 1 more
  • 1CYZ · NMR structure of the GAACTGGTTC/TRI-imidazole polyamide complex · AR1 A12 · binds DC4, DT5, DG6, DG7, DT8, DT9, DA18, DC19 and 3 more
  • 1B0S · Binding of ar-1-144, a tri-imidazole DNA minor groove binder, to ccgg sequence analyzed… · AR1 A11 · binds DC4, DC5, DG6, DG7, DT8, DT9, DC14, DG16 and 1 more
  • 1CYZ · NMR structure of the GAACTGGTTC/TRI-imidazole polyamide complex · AR1 A12 · binds DC4, DT5, DG6, DG7, DT8, DT9, DA18, DC19 and 3 more

Residues it binds most

DG 8, DT 8, DC 8, DA 4 (residue and the binding sites it lines).

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