MolNFT v1 · #140993 · protein
Crystal structure of the complex of archaeal ribosomal stalk protein AP1 and archaeal translation initiation factor AIF5B
5YT0: “Crystal structure of the complex of archaeal ribosomal stalk protein AP1 and archaeal translation initiation…”. X-ray diffraction, 1 ligand (GDP). MolNFT v1 #140993 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YT0
- Type
- protein
- Length
- 342 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9Y9B3
- Ligands
- GDP
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 331 | — | Q9Y9B3 |
| B | — | protein | 11 | — | — |
Ligands and binding sites
- GDP · Guanosine-5'-diphosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YT0 · Crystal structure of the complex of archaeal ribosomal stalk protein aP1 and archaeal… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9Y9B3 · AlphaFold monomer V2.0 prediction for probable translation initiation factor if-2 (Q9Y9B3) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y9B3
- Elsewhere: RCSB PDB 5YT0 · PDBe 5YT0 · UniProt Q9Y9B3
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