MolNFT v1 · #140975 · protein
Diol dehydratase - ALPHA/T172A mutant complexed with adocbl, aerobically-prepared crystal
5YSH: “Diol dehydratase - ALPHA/T172A mutant complexed with adocbl, aerobically-prepared crystal”. X-ray diffraction, 4 ligands (5AD, B12, K). MolNFT v1 #140975 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YSH
- Type
- protein
- Length
- 3,446 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q59470, Q59471, Q59472
- Ligands
- 5AD, B12, K, CA
Structure
x-ray diffraction · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, J | — | protein | 551 | — | Q59470 |
| B | — | protein | 177 | — | Q59471 |
| C, F, I, L | — | protein | 136 | — | Q59472 |
| D, G | — | protein | 550 | — | Q59470 |
| E | — | protein | 176 | — | Q59471 |
| H | — | protein | 180 | — | Q59471 |
| K | — | protein | 167 | — | Q59471 |
Ligands and binding sites
- 5AD · 5'-deoxyadenosine · ligand · 4 copies · chains A, D, G, J
- B12 · Cobalamin · ligand · 4 copies · chains A, B, D, E, G, H, J, K
- K · Potassium ion · metal · 8 copies · chains A, D, G, J
- CA · Calcium ion · metal · 4 copies · chains A, D, G, J
- PGO · S-1,2-propanediol · additive · 4 copies · chains A, D, G, J
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YSH · Diol dehydratase - alpha/T172A mutant complexed with AdoCbl, aerobically-prepared crystal · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q59470
- Every structure of UniProt Q59471
- Every structure of UniProt Q59472
- Elsewhere: RCSB PDB 5YSH · PDBe 5YSH · UniProt Q59470 · UniProt Q59471 · UniProt Q59472
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