MolNFT v1 · #140909 · protein

Crystal structure of E.COLI aminopeptidase N in complex with puromycin

5YQB: “Crystal structure of E.COLI aminopeptidase N in complex with puromycin”. X-ray diffraction, 2 ligands (GMC, ZN). MolNFT v1 #140909 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5YQB
Type: protein
Length: 867 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P04825
Ligands: GMC, ZN

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	867	—	P04825

Ligands and binding sites

GMC · (2R,3R,4S,5S)-4-amino-2-[6-(dimethylamino)-9H-purin-9-yl]-5-(hydroxymethyl)tetrahydro-3-furanol · ligand · chains A
ZN · Zinc ion · metal · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5YQB · Crystal structure of E.coli aminopeptidase N in complex with Puromycin · the same entry in another collection · chain A against A, TM-score 1.00
P04825 · AlphaFold monomer V2.0 prediction for aminopeptidase N (P04825) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P04825
Elsewhere: RCSB PDB 5YQB · PDBe 5YQB · UniProt P04825

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