MolNFT v1 · #140903 · protein

Solution NMR structure and backbone dynamics of the partially disordered arabidopsis thaliana phloem protein 16-1, a putative mRNA transporter

5YQ3 · AT3G55470: “Solution NMR structure and backbone dynamics of the partially disordered arabidopsis thaliana phloem protein…”. Solution nmr, 3 pockets (best druggability 0.70). MolNFT v1 #140903 on GenesisL1: 3D structure, binding…

PDB: 5YQ3
Type: protein
Length: 162 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: AT3G55470
UniProt: Q9M2T2
Pockets: 3 · best druggability 0.70

Structure

solution nmr · 1 distinct chain · 6% helix, 10% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	AT3G55470	protein	162	6% helix, 10% strand	Q9M2T2

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	542	0.70	0.79	59	empty
2	91	0.39	0.76	18	empty
3	58	0.28	0.74	13	empty

Compared structures

5YQ3 · Solution NMR Structure and Backbone Dynamics of the Partially Disordered Arabidopsis… · the same entry in another collection · chain A against A, TM-score 1.00
Q9M2T2 · AlphaFold monomer V2.0 prediction for 16 kda phloem protein 1 (Q9M2T2) · a predicted model of the same protein · chain A against A, TM-score 0.38

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9M2T2
Elsewhere: RCSB PDB 5YQ3 · PDBe 5YQ3 · UniProt Q9M2T2

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.