Research workbench
Solution NMR structure and backbone dynamics of the partially disordered arabidopsis thaliana phloem protein 16-1, a putative mRNA transporter
Analyse Solution NMR structure and backbone dynamics of the partially disordered… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5YQ3
- Type
- protein
- Length
- 162 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- AT3G55470
- UniProt
- Q9M2T2
- Pockets
- 3 · best druggability 0.70
Structure
solution nmr · 1 distinct chain · 6% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | AT3G55470 | protein | 162 | 6% helix, 10% strand | Q9M2T2 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 542 | 0.70 | 0.79 | 59 | empty |
| 2 | 91 | 0.39 | 0.76 | 18 | empty |
| 3 | 58 | 0.28 | 0.74 | 13 | empty |
Compared structures
- 5YQ3 · Solution NMR Structure and Backbone Dynamics of the Partially Disordered Arabidopsis… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9M2T2 · AlphaFold monomer V2.0 prediction for 16 kda phloem protein 1 (Q9M2T2) · a predicted model of the same protein · chain A against A, TM-score 0.38
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9M2T2
- Elsewhere: RCSB PDB 5YQ3 · PDBe 5YQ3 · UniProt Q9M2T2
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