MolNFT v1 · #140872 · protein

P62/SQSTM1 zz domain

5YP7 · Sequestosome-1: “P62/SQSTM1 zz domain”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #140872 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5YP7
Type: protein
Length: 88 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sequestosome-1
UniProt: Q13501
Ligands: ZN

Structure

x-ray diffraction · 1 distinct chain · 11% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, D	Sequestosome-1	protein	44	11% helix, 27% strand	Q13501

Ligands and binding sites

ZN · Zinc ion · metal · 4 copies · chains A, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–D · 211 Å² buried · 1 hydrogen bond · protein-protein

Compared structures

5YP7 · p62/SQSTM1 ZZ domain · the same entry in another collection · chain A against A, TM-score 1.00
Q13501 · AlphaFold monomer V2.0 prediction for sequestosome-1 (Q13501) · a predicted model of the same protein · chain A against A, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q13501
Elsewhere: RCSB PDB 5YP7 · PDBe 5YP7 · UniProt Q13501

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.