MolNFT v1 · #140867 · protein
Crystal structure of dipeptidyl peptidase IV (dpp IV) with DPP4 inhibitor from pseudoxanthomonas mexicana WO24
5YP2: “Crystal structure of dipeptidyl peptidase IV (dpp IV) with DPP4 inhibitor from pseudoxanthomonas mexicana WO24”. X-ray diffraction, 1 ligand (8YC). MolNFT v1 #140867 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YP2
- Type
- protein
- Length
- 1,448 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q6F3I7
- Ligands
- 8YC
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 724 | — | Q6F3I7 |
Ligands and binding sites
- 8YC · (2S,5R)-1-[2-[[1-(hydroxymethyl) cyclopentyl]amino]ethanoyl]pyrrolidine-2,5-dicarbonitrile · ligand · 2 copies · chains A, B
- GOL · Glycerol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YP2 · Crystal structure of dipeptidyl peptidase IV (DPP IV) with DPP4 inhibitor from… · the same entry in another collection · chain A against A, TM-score 1.00
- Q6F3I7 · AlphaFold monomer V2.0 prediction for dipeptidyl aminopeptidase 4 (Q6F3I7) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6F3I7
- Elsewhere: RCSB PDB 5YP2 · PDBe 5YP2 · UniProt Q6F3I7
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