MolNFT v1 · #140799 · protein
Structural basis of glycan specificity and identification of a novel glycan binding cavity in human P[19] rotavirus
5YMS: “Structural basis of glycan specificity and identification of a novel glycan binding cavity in human P[19]…”. X-ray diffraction, 3 ligands (NAG, A2G, GAL). MolNFT v1 #140799 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5YMS
- Type
- protein
- Length
- 1,283 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9Q2P6
- Ligands
- NAG, A2G, GAL
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, G | — | protein | 161 | — | Q9Q2P6 |
| C, D, E, F, H | — | protein | 160 | — | Q9Q2P6 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 8 copies · chains F, H, A, B, C, D, E, G
- A2G · 2-acetamido-2-deoxy-alpha-D-galactopyranose · sugar · 2 copies · chains F, H
- GAL · beta-D-galactopyranose · sugar · 2 copies · chains F, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YMS · Structural basis of glycan specificity and identification of a novel glycan binding… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Q2P6
- Elsewhere: RCSB PDB 5YMS · PDBe 5YMS · UniProt Q9Q2P6
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