MolNFT v1 · #140709 · protein

Structural insights into the CRISPR-CAS-associated ribonuclease activity of staphylococcus epidermidis CSM3

5YJD: “Structural insights into the CRISPR-CAS-associated ribonuclease activity of staphylococcus epidermidis CSM3”. X-ray diffraction, 1 ligand (CA), 1 pocket (best druggability 0.65). MolNFT v1 #140709 on GenesisL1: 3D structure, binding…

PDB: 5YJD
Type: protein
Length: 368 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: CSM3
UniProt: Q5HK91
Ligands: CA
Pockets: 1 · best druggability 0.65

Structure

x-ray diffraction · 2 distinct chains · 29% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	CSM3	protein	186	29% helix, 32% strand	Q5HK91
B	CSM3	protein	182	30% helix, 31% strand	Q5HK91

Ligands and binding sites

CA · Calcium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	467	0.65	0.78	64	empty

Interfaces

1 interface between chains.

A–B · 521 Å² buried · 9 hydrogen bonds · protein-protein

Compared structures

5YJD · Structural insights into the CRISPR-Cas-associated ribonuclease activity of… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5HK91
Elsewhere: RCSB PDB 5YJD · PDBe 5YJD · UniProt Q5HK91

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