MolNFT v1 · #140704 · protein
Identification of a small molecule inhibitor for the tudor domain of TDRD3
5YJ8 · Tudor domain-containing protein 3: “Identification of a small molecule inhibitor for the tudor domain of TDRD3”. X-ray diffraction, 2 ligands (8W9, SO4). MolNFT v1 #140704 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5YJ8
- Type
- protein
- Length
- 60 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tudor domain-containing protein 3
- UniProt
- Q9H7E2
- Ligands
- 8W9, SO4
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tudor domain-containing protein 3 | protein | 60 | 10% helix, 53% strand | Q9H7E2 |
Ligands and binding sites
- 8W9 · 5-(aminomethyl)-1,3-dimethyl-benzimidazol-2-one · ligand · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YJ8 · Identification of a small molecule inhibitor for the Tudor domain of TDRD3 · the same entry in another collection · chain A against A, TM-score 1.00
- Q9H7E2 · AlphaFold monomer V2.0 prediction for tudor domain-containing protein 3 (Q9H7E2) · a predicted model of the same protein · chain A against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9H7E2
- Elsewhere: RCSB PDB 5YJ8 · PDBe 5YJ8 · UniProt Q9H7E2
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