MolNFT v1 · #140697 · protein
Mouse cereblon thalidomide binding domain complexed with R-form thalidomide
5YJ1: “Mouse cereblon thalidomide binding domain complexed with R-form thalidomide”. X-ray diffraction, 2 ligands (ZN, SO4). MolNFT v1 #140697 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YJ1
- Type
- protein
- Length
- 1,516 residues
- Chains
- 16
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8C7D2
- Ligands
- ZN, SO4
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D | — | protein | 97 | — | Q8C7D2 |
| G | — | protein | 99 | — | Q8C7D2 |
| J, n | — | protein | 92 | — | Q8C7D2 |
| M, P, S, V, Y, b, e, h, q | — | protein | 94 | — | Q8C7D2 |
| k | — | protein | 95 | — | Q8C7D2 |
| t | — | protein | 98 | — | Q8C7D2 |
Ligands and binding sites
- ZN · Zinc ion · metal · 16 copies · chains A, D, G, J, M, P, S, V, Y, b, e, h, k, n, q, t
- SO4 · Sulfate ion · ion · 30 copies · chains A, D, G, J, M, P, S, V, Y, b, e, h, k, t, n, q
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YJ1 · Mouse Cereblon thalidomide binding domain complexed with R-form thalidomide · the same entry in another collection · chain G against G, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8C7D2
- Elsewhere: RCSB PDB 5YJ1 · PDBe 5YJ1 · UniProt Q8C7D2
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