MolNFT v1 · #140674 · protein
Crystal structure of kni-10742 bound plasmepsin II (pmii) from plasmodium falciparum
5YIE: “Crystal structure of kni-10742 bound plasmepsin II (pmii) from plasmodium falciparum”. X-ray diffraction, 3 ligands (CPS, 8VF, NA). MolNFT v1 #140674 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YIE
- Type
- protein
- Length
- 327 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8I6V3
- Ligands
- CPS, 8VF, NA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 327 | — | Q8I6V3 |
Ligands and binding sites
- CPS · 3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfonate · ligand · 2 copies · chains A
- 8VF · (4R)-3-[(2S,3S)-3-[2-[4-[2-azanylethyl(ethyl)amino]-2, 6-dimethyl-phenoxy]ethanoylamino]-2-oxidanyl-4-phenyl-butanoyl]-5,5-dimethyl-N-[(1S,2R)-2-oxidanyl-2,3-dihydro-1H-inden-1-yl]-1,3-thiazolidine-4-carboxamide · ligand · chains A
- NA · Sodium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YIE · Crystal Structure of KNI-10742 bound Plasmepsin II (PMII) from Plasmodium falciparum · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8I6V3
- Elsewhere: RCSB PDB 5YIE · PDBe 5YIE · UniProt Q8I6V3
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.