MolNFT v1 · #140659 · protein
Structure of lactococcus lactis zitr, E41A mutant
5YHZ · Zinc transport transcriptional regulator: “Structure of lactococcus lactis zitr, E41A mutant”. X-ray diffraction, 1 ligand (ZN), 1 pocket (best druggability 0.58). MolNFT v1 #140659 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5YHZ
- Type
- protein
- Length
- 146 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Zinc transport transcriptional regulator
- UniProt
- Q9CDU5
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 62% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Zinc transport transcriptional regulator | protein | 146 | 62% helix, 11% strand | Q9CDU5 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains A
- PEG · Di(hydroxyethyl)ether · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 191 | 0.58 | 0.81 | 24 | ZN |
Compared structures
- 5YHZ · Structure of Lactococcus lactis ZitR, E41A mutant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9CDU5
- Elsewhere: RCSB PDB 5YHZ · PDBe 5YHZ · UniProt Q9CDU5
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