Research workbench

Structure of lactococcus lactis zitr, E41A mutant

Analyse Structure of lactococcus lactis zitr, E41A mutant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5YHZ
Type: protein
Length: 146 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Zinc transport transcriptional regulator
UniProt: Q9CDU5
Ligands: ZN
Pockets: 1 · best druggability 0.58

Structure

x-ray diffraction · 1 distinct chain · 62% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Zinc transport transcriptional regulator	protein	146	62% helix, 11% strand	Q9CDU5

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains A
MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains A
PEG · Di(hydroxyethyl)ether · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	191	0.58	0.81	24	ZN

Compared structures

5YHZ · Structure of Lactococcus lactis ZitR, E41A mutant · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9CDU5
Elsewhere: RCSB PDB 5YHZ · PDBe 5YHZ · UniProt Q9CDU5

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.