MolNFT v1 · #140633 · protein
Miraculin-like protein from vitis vinifera
5YH4 · Mirauclin-like protein: “Miraculin-like protein from vitis vinifera”. X-ray diffraction, 1 pocket (best druggability 0.33). MolNFT v1 #140633 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YH4
- Type
- protein
- Length
- 179 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mirauclin-like protein
- UniProt
- A5BCQ0
- Pockets
- 1 · best druggability 0.33
Structure
x-ray diffraction · 1 distinct chain · 3% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mirauclin-like protein | protein | 179 | 3% helix, 39% strand | A5BCQ0 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 7 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 73 | 0.33 | 0.76 | 17 | EDO |
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 5YH4 · Miraculin-like protein from Vitis vinifera · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A5BCQ0
- Elsewhere: RCSB PDB 5YH4 · PDBe 5YH4 · UniProt A5BCQ0
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