Research workbench

Miraculin-like protein from vitis vinifera

Analyse Miraculin-like protein from vitis vinifera in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5YH4
Type: protein
Length: 179 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Mirauclin-like protein
UniProt: A5BCQ0
Pockets: 1 · best druggability 0.33

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Mirauclin-like protein	protein	179	3% helix, 39% strand	A5BCQ0

Ligands and binding sites

EDO · 1,2-ethanediol · additive · 7 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	73	0.33	0.76	17	EDO

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

5YH4 · Miraculin-like protein from Vitis vinifera · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A5BCQ0
Elsewhere: RCSB PDB 5YH4 · PDBe 5YH4 · UniProt A5BCQ0

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.