MolNFT v1 · #140524 · protein

Crystal structure of a disease-related gene, HCDC73(1-100)

5YDF · Parafibromin: “Crystal structure of a disease-related gene, HCDC73(1-100)”. X-ray diffraction. MolNFT v1 #140524 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5YDF
Type: protein
Length: 196 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Parafibromin
UniProt: Q6P1J9

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Parafibromin	protein	98	44% helix, 20% strand	Q6P1J9

Interfaces

1 interface between chains.

A–B · 416 Å² buried · 6 hydrogen bonds · protein-protein

Compared structures

5YDF · Crystal structure of a disease-related gene, hCDC73(1-100) · the same entry in another collection · chain A against A, TM-score 1.00
Q6P1J9 · AlphaFold monomer V2.0 prediction for parafibromin (Q6P1J9) · a predicted model of the same protein · chain B against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6P1J9
Elsewhere: RCSB PDB 5YDF · PDBe 5YDF · UniProt Q6P1J9

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