MolNFT v1 · #140458 · protein
Crystal structure of the GLUA2O lbd in complex with glutamate and LY451395
5YBG: “Crystal structure of the GLUA2O lbd in complex with glutamate and LY451395”. X-ray diffraction, 2 ligands (8SO, ZN). MolNFT v1 #140458 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5YBG
- Type
- protein
- Length
- 1,566 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P42262
- Ligands
- 8SO, ZN
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, D, F | — | protein | 261 | — | P42262 |
| C | — | protein | 260 | — | P42262 |
| E | — | protein | 262 | — | P42262 |
Ligands and binding sites
- 8SO · N-[(2R)-2-[4-[4-[2-(methylsulfonylamino) ethyl]phenyl]phenyl]propyl]propane-2-sulfonamide · ligand · 3 copies · chains A, B, C, D, E, F
- ZN · Zinc ion · metal · 10 copies · chains A, C, B, D, E, F
- ACT · Acetate ion · additive · 5 copies · chains A, C, D, E
- GOL · Glycerol · additive · 2 copies · chains A, B, E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5YBG · Crystal structure of the GluA2o LBD in complex with glutamate and LY451395 · the same entry in another collection · chain F against F, TM-score 1.00
- P42262 · AlphaFold monomer V2.0 prediction for glutamate receptor 2 (P42262) · a predicted model of the same protein · chain E against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P42262
- Elsewhere: RCSB PDB 5YBG · PDBe 5YBG · UniProt P42262
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