MolNFT v1 · #140419 · protein
Crystal structure of archaeal flagellin FLAB1 from methanocaldococcus jannaschii
5YA6 · Flagellin B1: “Crystal structure of archaeal flagellin FLAB1 from methanocaldococcus jannaschii”. X-ray diffraction, 1 ligand (CA), 1 pocket (best druggability 0.37). MolNFT v1 #140419 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5YA6
- Type
- protein
- Length
- 328 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flagellin B1
- UniProt
- Q58301
- Ligands
- CA
- Pockets
- 1 · best druggability 0.37
Structure
x-ray diffraction · 2 distinct chains · 9% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Flagellin B1 | protein | 163 | 9% helix, 49% strand | Q58301 |
| B | Flagellin B1 | protein | 165 | 10% helix, 48% strand | Q58301 |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 122 | 0.37 | 0.73 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 681 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 5YA6 · Crystal structure of archaeal flagellin FlaB1 from Methanocaldococcus jannaschii · the same entry in another collection · chain A against A, TM-score 1.00
- Q58301 · AlphaFold monomer V2.0 prediction for flagellin B1 (Q58301) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q58301
- Elsewhere: RCSB PDB 5YA6 · PDBe 5YA6 · UniProt Q58301
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