MolNFT v1 · #140357 · protein
Periplasmic heme-binding protein bhut in complex with two hemes (holo- 2 form)
5Y8A: “Periplasmic heme-binding protein bhut in complex with two hemes (holo- 2 form)”. X-ray diffraction, 2 ligands (HEM, CA). MolNFT v1 #140357 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5Y8A
- Type
- protein
- Length
- 536 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- B4EKB3
- Ligands
- HEM, CA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 268 | — | B4EKB3 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 4 copies · chains A, B
- CA · Calcium ion · metal · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5Y8A · Periplasmic heme-binding protein BhuT in complex with two hemes (holo-2 form) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B4EKB3
- Elsewhere: RCSB PDB 5Y8A · PDBe 5Y8A · UniProt B4EKB3
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