MolNFT v1 · #140181 · protein
Crystal structure of the oligomerization domain of NSP4 from the rotavirus strain MF66
5Y2H · Nonstructural protein 4: “Crystal structure of the oligomerization domain of NSP4 from the rotavirus strain MF66”. X-ray diffraction. MolNFT v1 #140181 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5Y2H
- Type
- protein
- Length
- 188 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nonstructural protein 4
- UniProt
- Q6QT01
Structure
x-ray diffraction · 4 distinct chains · 91% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| D | Nonstructural protein 4 | protein | 48 | 92% helix, 0% strand | Q6QT01 |
| A | Nonstructural protein 4 | protein | 48 | 92% helix, 0% strand | Q6QT01 |
| B | Nonstructural protein 4 | protein | 46 | 89% helix, 0% strand | Q6QT01 |
| C | Nonstructural protein 4 | protein | 46 | 91% helix, 0% strand | Q6QT01 |
Interfaces
6 interfaces between chains.
- D–B · 1136 Ų buried · 12 hydrogen bonds · protein-protein
- D–A · 1084 Ų buried · 9 hydrogen bonds · protein-protein
- B–C · 1052 Ų buried · 8 hydrogen bonds · protein-protein
- A–C · 1026 Ų buried · 6 hydrogen bonds · protein-protein
- A–B · 217 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 5Y2H · Crystal structure of the oligomerization domain of NSP4 from the rotavirus strain MF66 · the same entry in another collection · chain D against D, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6QT01
- Elsewhere: RCSB PDB 5Y2H · PDBe 5Y2H · UniProt Q6QT01
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