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Crystal structure of the oligomerization domain of NSP4 from the rotavirus strain MF66

Analyse Crystal structure of the oligomerization domain of NSP4 from the rotavirus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5Y2H
Type: protein
Length: 188 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nonstructural protein 4
UniProt: Q6QT01

Structure

x-ray diffraction · 4 distinct chains · 91% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
D	Nonstructural protein 4	protein	48	92% helix, 0% strand	Q6QT01
A	Nonstructural protein 4	protein	48	92% helix, 0% strand	Q6QT01
B	Nonstructural protein 4	protein	46	89% helix, 0% strand	Q6QT01
C	Nonstructural protein 4	protein	46	91% helix, 0% strand	Q6QT01

Interfaces

6 interfaces between chains.

D–B · 1136 Å² buried · 12 hydrogen bonds · protein-protein
D–A · 1084 Å² buried · 9 hydrogen bonds · protein-protein
B–C · 1052 Å² buried · 8 hydrogen bonds · protein-protein
A–C · 1026 Å² buried · 6 hydrogen bonds · protein-protein
A–B · 217 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

5Y2H · Crystal structure of the oligomerization domain of NSP4 from the rotavirus strain MF66 · the same entry in another collection · chain D against D, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6QT01
Elsewhere: RCSB PDB 5Y2H · PDBe 5Y2H · UniProt Q6QT01

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