MolNFT v1 · #140147 · protein
Monomeric L-threonine 3-dehydrogenase from metagenome database (L-ser and NAD+ bound form)
5Y1E · NAD dependent EPIMERASE/DEHYDRATASE family: “Monomeric L-threonine 3-dehydrogenase from metagenome database (L-ser and NAD+ bound form)”. X-ray diffraction, 2 ligands (NAD, SER), 1 pocket (best druggability 0.77). MolNFT v1 #140147…
- PDB
- 5Y1E
- Type
- protein
- Length
- 308 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NAD dependent EPIMERASE/DEHYDRATASE family
- UniProt
- D6PBM7
- Ligands
- NAD, SER
- Pockets
- 1 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NAD dependent EPIMERASE/DEHYDRATASE family | protein | 308 | 46% helix, 17% strand | D6PBM7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 395 | 0.77 | 0.86 | 47 | NAD, SER |
Compared structures
- 5Y1E · monomeric L-threonine 3-dehydrogenase from metagenome database (L-Ser and NAD+ bound form) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D6PBM7
- Elsewhere: RCSB PDB 5Y1E · PDBe 5Y1E · UniProt D6PBM7
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